Data Source

The following are the data sources used to build the database.

**Assembly information: COW**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
UMD v3.1.1	UMD3.1	GCF_000003055.5
BTAU v4.6.1	BTAU4.6	GCF_000003205.5
BTAU v4.2	-	GCF_000003205.4

**Chip information (source): COW**
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build	Interbull info
Illumina 3k	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	Interbull
Illumina LD v1	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	Interbull
Illumina LD v1.1	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	N/A
Illumina LD v.2	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	N/A
Illumina 54k v.1	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	Interbull
Illumina 54k v.2	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	Interbull
Illumina HD	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	146	Interbull
Affymetrix HD	Axiom GW Bos v.35	Axiom GW Bos v.35	Axiom GW Bos v.35	146	N/A
GeneSeek Dairy v.2	iManifest	iManifest	iManifest	146	N/A
Geneseek GPP v.1	iManifest (Geneseek)	iManifest (Geneseek)	iManifest (Geneseek)	146	Interbull
Geneseek GPP v.2	SNP list (Geneseek)	linked to Illumina¹	linked to Illumina¹	146	Interbull
Geneseek GPP v.3	iManifest (Geneseek)	iManifest (Geneseek)	iManifest (Geneseek)	146	N/A
Geneseek GPP HD	SNP list (Geneseek)	linked to Illumina¹	linked to Illumina¹	146	Interbull
Geneseek GGP HD v.2	iManifest (Geneseek)	iManifest (Geneseek)	iManifest (Geneseek)	146	N/A
ICBF IDV v.2	iManifest (ICBF)	iManifest (ICBF)	iManifest (ICBF)	146	N/A
ICBF IDV v.3	iManifest (ICBF)	iManifest (ICBF)	iManifest (ICBF)	146	N/A

¹ Illumina information corresponding to these SNP names were used to obtain such information (which might be incomplete)

**Assembly information: PIG**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
Sscrofa v10.2	Sscrofa10.2	GCF_000003025.5

**Chip information (source):** PIG
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build
Illumina 60k v1	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	143
Illumina 60k v2	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	143
GeneSeek-Neogen GPP 10k	iManifest (GeneSeek)	iManifest (GeneSeek)	iManifest (GeneSeek)	143
GeneSeek-Neogen GPPHD (80k)	iManifest (GeneSeek)	iManifest (GeneSeek)	iManifest (GeneSeek)	143
Affymetrix Axiom PigHD	Axiom PigHD.r3	Axiom PigHD.r3	Axiom PigHD.r3	143

**Assembly information: HORSE**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
EquCab v2.0	EquCab2	GCF_000002305.2

**Chip information (source):** HORSE
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build
Illumina 50k	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	144
GeneSeek-Neogen 65k	iManifest (GeneSeek)	iManifest (GeneSeek)	iManifest (GeneSeek)	144
Affymetrix HD	Axiom GW Horse r1	Axiom GW Horse r1	Axiom GW Horse r1	144

**Assembly information: SHEEP**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
Oar v.3.1	Oar3	GCF_000298735.1
Oar v.4.0	Oar4	GCA_000298735.2

**Chip information (source):** SHEEP
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build
Illumina 50k	iManifest (Illumina)	iManifest (Illumina)	iManifest (Illumina)	147
AgResearch OvineHD	iManifest (AgResearch)	iManifest (AgResearch)	iManifest (AgResearch)	147

**Assembly information: GOAT**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
CHIR v.1.0	CHIR_1.0	GCF_000317765.1
Oar v.3.1	Oar3	GCF_000298735.1
UMD v3.1.1	UMD3.1	GCF_000003055.5

**Chip information (source):** GOAT
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build
IGGC-Illumina 50k	iManifest (IGGC)	iManifest (IGGC)	iManifest (IGGC)	143

**Assembly information: CHICKEN**
Assembly ID (dbSNP)	Assembly name	RefSeq Assembly ID
Gallus Gallus v4.0	Gallus_Gallus-4.0	GCF_000002315.3
Gallus Gallus v2.1	Gallus_Gallus-2.1	GCF_000002315.2

**Chip information (source):** CHICKEN
SNP chip	SNP names	Native positions	Allele coding	latest dbSNP build
Affymetrix HD	Axiom GW Chick v.35	Axiom GW Chick v.35	Axiom GW Chick v.35	147

Joomla templates by a4joomla

We use cookies to improve our website and your experience when using it. Cookies used for the essential operation of this site have already been set. By continuing to use this site you agree to our use of cookies. To find out more about the cookies we use and how to delete them, see our privacy policy.
I accept cookies from this site. Agree